config files update

.gitignore

-.DS_Store
 *.aux
-*.bak
 *.bbl
 *.bcf
 *.blg
+*.cfg
+*.cut
 *.dvi
 *.fdb_latexmk
 *.fls
+*.glo
+*.gls
 *.gz
+*.hd
+*.idx
+*.ilg
+*.ind
+*.lof
 *.log
+*.lot
+*.out
 *.out
 *.run.xml
 *.synctex.gz
 *.toc
+*.toc
 *.vtc
 *~
-*.?*#
+.DS_Store
 gitHeadInfo.gin

.latexmkrc

+$latex = 'latex  %O  --shell-escape %S';
+$pdflatex = 'pdflatex  %O  --shell-escape %S';
 @default_files = ("main.tex") ;
 $pdf_mode=1;
 $dvi_mode=0;